Open sstemann opened 11 months ago
Do you mean the chebi roles? Genes don't have them if so. The other facets like FDA don't apply here either.
For MVP2 0 Find Genes regulated by a particular chemical, a starting point to investigate would be:
tissues or cells gene regulatory networks chromosome Genome Browser has categories
Not sure what's currently available in Annotator or mygene.info @newgene
Did a review of mygene.info and found GO and pathways. I don't think tissue is available here. @newgene Is that right? If not, who is the GTEX contact?
@Genomewide you are right, we don't have tissue info at mygene.info. We do have the genomic location, and this type_of_gene
field might be useful too:
https://mygene.info/v3/query?species=human&facets=type_of_gene&facet_size=20
How about these GO categories?
yeah those go categories would work. We would probably have to create our own go slim or filter for high level terms
Genes don't have any facets - is there a list somewhere of what was discussed?
https://ui.ci.transltr.io/demo/results?l=Eletriptan&i=PUBCHEM.COMPOUND:77993&t=3&q=d1c6af0a-8f60-4f24-87fe-a5268c338cea