In CI UI, the Improve Agent Support Graphs don't seem to display EPC properly

[sstemann]

UI CI - what drugs may treat Hemolytic Anemia > results from Improve like 1-imidazol-1-yl-3-(4-octylphenoxy)propan-2-one

https://ui.ci.transltr.io/main/results?l=Hemolytic%20Anemia&i=MONDO:0003664&t=0&r=66e4b9c5&q=ee706588-2c77-41fa-8bb0-cdf332880fb8

In the ARAX GUI it looks like the support graph displayed the Associated With edge with primary KS spoke

Result Graph

Support Graph

The UI displays Associated With edge without any EPC

I don't know if this is a UI issue or an Improve issue. the infores looks OK

[dnsmith124]

@gprice1129 after looking at what's returned from the BE in the link above the provenance property of that edge is empty. Could you investigate and see if the issue lies with the BE?

[gprice1129]

@sstemann @dnsmith124 @sierra-moxon the SPOKE source is not showing up because it is missing an xref (link to source) in the catalog.

[sierra-moxon]

The master/main branch of Biolink Model now contains the SPOKE URL in the infores catalog.

[dnsmith124]

@gprice1129 will this fix show up in the UI automatically or will we need to update the infores catalog in the UI specifically?

[gprice1129]

@dnsmith124 we will have to update the catalog. That means our biolink-model version and infores-catalog will be from different versions of the biolink-model repo, but I do not think that will matter.

[sierra-moxon]

@gprice1129 - is this on the docket for release this cycle?

[sierra-moxon]

@suihuang-ISB - will you point me to the wiki page you want here? :)

[brettasmi]

@sierra-moxon , we don't have a wiki page for SPOKE KP itself, only the improving agent: https://github.com/NCATSTranslator/Translator-All/wiki/imProving-Agent, which has some details for SPOKE

An external page for the whole SPOKE project is located here: https://spoke.ucsf.edu/

If we need a dedicated page for SPOKE KP, then I can work on that next week.

[suihuang-ISB]

@sierra-moxon , we don't have a wiki page for SPOKE KP itself, only the improving agent: https://github.com/NCATSTranslator/Translator-All/wiki/imProving-Agent, which has some details for SPOKE

Thanks, Brett. I did not realize that this was about a SPOKE specific reference and not the imPROVING Wiki which has the detailed description of evidence by pointing to both SPOKE and the PSEV algorithm, incl. link to the SPOKE home page. SO we do not need two distinct Wikipages but we should be able to use the existing one - https://github.com/NCATSTranslator/Translator-All/wiki/imProving-Agent#propagated-spoke-entry-vectors-psevs

Why it is not there in t his specific example - I don't know - I cannot replicate the 1-imidazole answer... (not returned anymore)

[dnsmith124]

@gprice1129 can you confirm if this will be in our next release?

[gprice1129]

We are currently looking at how we should display missing URLs

[sstemann]

hoping this gets resolved for lobster 1? seems like there has been some change, now it looks like this:

https://ui.ci.transltr.io/main/results?l=Hemolytic%20Anemia&i=MONDO:0003664&t=0&r=0&q=376297df-7f59-417c-8d07-dda01eba74f5

[dnsmith124]

@sstemann we are planning on resolving this for lobster 1

[dnsmith124]

This issue is resolved on CI. Whenever a knowledge source is returned without a url to link to, "Link Unavailable" is displayed instead.

[dnsmith124]

Issue has been resolved, closing.