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NCATSTranslator / Feedback

A repo for tracking gaps in Translator data and finding ways to fill them.
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Amino acid sequence instead of human readable label for TNF-alpha #773

Closed khanspers closed 2 months ago

khanspers commented 4 months ago

Query: What drugs may treat allergic asthma? https://ui.test.transltr.io/main/results?l=Allergic%20Asthma&i=MONDO:0004784&t=0&r=0&q=051c9c6e-9bdf-46dd-b35e-28cf5ee44d03

On page 2, "H-lys-gly-asp-arg-leu-ser-oh" is returned as an answer. Following the link to PubChem, this is in fact TNF-alpha. Is this a node normalizer issue?

gglusman commented 4 months ago

Doesn't seem like it. Node Norm gives TNF-alpha as preferred name:

  "pubchem.compound:44356648": {
    "id": {
      "identifier": "PUBCHEM.COMPOUND:44356648",
      "label": "TNF-alpha"
    },
sstemann commented 2 months ago

this looks resolved with the latest NN

https://ui.test.transltr.io/main/results?l=Allergic%20Asthma&i=MONDO:0004784&t=0&r=0&q=28951c02-86d8-4b31-b0f0-c50c4dafba6c

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