Closed sstemann closed 2 months ago
dnsmith124
commented
5 months ago I don't believe these paths should be merged, if you mouse over the nodes that begin with Fech Binds Fe... their names differ after the ellipsis, and they have different curies.
For example:
Fech Binds Fe2+ To Prin9 To Form Heme (dictyostelium Discoideum)
vs
Fech Binds Fe2+ To Prin9 To Form Heme (rattus Norvegicus)
I just moused through them and don't see any duplicates.
sierra-moxon
commented
3 months ago from TAQA: [Gaurav] - these would be deemed a cluster using the method I showed in O&O last week 🙂 - [Gwenlyn] see https://github.com/NCATSTranslator/Feedback/issues/863 as example [Chris] - the filter we put on to remove these kinds of pathways should be in TEST via Fugu.
sandrine-muller-research
commented
3 months ago Retested today The nodes in the middle look different but do not seem right/normalized:
Result comes from ARAGORN. I went ahead and tried to look at the graphs in ARAX but I get no output:
This issue need further retesting at another time.
sstemann
commented
3 months ago i'm not seeing any improvements to these paths returned from ARAGORN in Fugu/Test.
Its the same in CI. Looks like this is not fixed in Fugu or queued up to be deployed to Test. https://ui.ci.transltr.io/main/results?l=Aceruloplasminemia&i=MONDO:0011426&t=0&r=0&q=0886d892-dde0-48f7-847d-e0454e96803c
sstemann
commented
2 months ago it looks like these "FECH binds Fe2+..." nodes are all unique. So I think this is now closed.
The node identifiers on the start middle and end nodes look the same, the predicates look the same, the evidence on the predicates look the same
https://ui.test.transltr.io/main/results?l=Aceruloplasminemia&i=MONDO:0011426&t=0&r=0&q=77003cf0-f9ff-4864-bc02-b89f2c216c82