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NCATSTranslator / Feedback

A repo for tracking gaps in Translator data and finding ways to fill them.
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Missing evidence details #803

Closed gglusman closed 4 months ago

gglusman commented 4 months ago

Testing what may treat sepsis https://ui.test.transltr.io/main/results?l=Sepsis&i=HP:0100806&t=0&r=0&q=d2f631c2-11d6-4ffd-90b1-935f81c7bcdf

Result 5: "immunoglobulins, intravenous", a lookup edge supported by SemMed text mining, and its evidence display starts with what appears to be a broken entry: image

bill-baumgartner commented 4 months ago

This appears to be a case of a PubMed abstract that was at one time processed by SemMed (and is still present in the SemMed data files -- I just confirmed), but has since been removed from PubMed. See the PMID 26533250 is not available message when accessing the PubMed link for this PMID. Because it has been removed from PubMed, no data for it will be returned from our Publication Metadata Service, so the missing details are expected in this case.

bill-baumgartner commented 4 months ago

I'll also point out that all of the snippets shown for the SemMed results seem to be the beginning of the corresponding abstracts. The SemMed data files include the sentence-level information for all assertions. Those KPs who are serving SemMed should include the sentence-level data so that the UI can show the exact snippet of text from which each assertion was derived.

gprice1129 commented 4 months ago

This does not seem like a UI issue, right?

andrewsu commented 4 months ago

I agree, @gprice1129. And I think this is also essentially a duplicate of #625 which has more details, so I'm going to close this one...