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NCATSTranslator / Feedback

A repo for tracking gaps in Translator data and finding ways to fill them.
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BTE listed as only source for edge #831

Open uhbrar opened 1 week ago

uhbrar commented 1 week ago

Query is: What drugs may treat Bethlem Myopathy

https://ui.transltr.io/results?l=Bethlem%20Myopathy&i=MONDO:0008029&t=0&r=0&q=0e1c5008-cf66-49b0-b0fc-e5ba31a3a4f0

In result for Dimethyl Sulfoxide, there is a path with an edge who's only knowledge source is BTE.

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sstemann commented 5 days ago

this can be replicated on Test:

https://ui.test.transltr.io/main/results?l=Bethlem%20Myopathy&i=MONDO:0008029&t=0&r=0&q=b851031e-658e-4d44-a231-08a80f732674

image

tokebe commented 2 days ago

This appears to be a failure to display information from BTE's response. BTE does provide a Bethlem Myopathy -> has_phenotype -> Flexion Contracture for which it is the source, yes, however the edge provides two support graphs which show that Flexion Contracture is a phenotype of Bethlem Myopathy via as subclass (MONDO:0034022). No edge in the support graphs of this edge have BTE as a primary knowledge source.

This is a case of subclass expansion, which BTE does independently of inferred mode, which is why it's not "flattened" into BTE's inferred edge.