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A repo for tracking gaps in Translator data and finding ways to fill them.
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Update UI to Support Four Hop Paths #935

Open sstemann opened 1 week ago

sstemann commented 1 week ago

Guppy in Test

  1. Run MVP2 What decreases PTGDR2 in the Test UI: https://ui.test.transltr.io/results?l=PTGDR2%20(Human)&i=NCBIGene:11251&t=2&r=0&q=57a22b07-33cf-4dcd-8b39-db5237f45a86
  2. The second response is Fatty Acid (repeat for 5' Flanking Region, Isoxazole, Carbamazepine etc)
  3. One Direct Edge
image
  1. EPC is ARAX

    image
  2. In the ARAX GUI, it appears to have a robust support graph

    image

Cannot replicate in Prod, ARAX's answers in Prod do not have support graphs (all direct) https://ui.transltr.io/results?l=PTGDR2%20(Human)&i=NCBIGene:11251&t=2&r=0&q=7ff2b4d6-2666-4633-b231-2b75d298bf59

MarkDWilliams commented 1 week ago

Took a look at the JSON, and it looks like the chain of connections here is:

So, the result has analyses, one of those analyses has an edge in edge_bindings, that edge has attributes, and among those attributes is one for support graphs. That attribute contains one support graph (aux_graph_0_creative_CRG_option_group_1) and that support graph is found in auxiliary_graphs, and has the edges that are shown by ARAX.