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NCATSTranslator / Knowledge_Graph_Exchange_Registry

The Biomedical Data Translator Consortium site for development of Knowledge Graph Exchange Standards and Registry
MIT License
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.tsv upload crashes KGE backend #51

Closed jeffhhk closed 3 years ago

jeffhhk commented 3 years ago

Repro:

1) Create a new fileset for yeast-sri-reference-kg-tsv 2) Upload nodes.tsv 3) Upload edges.tsv 4) Click "Done Uploading"

Result:

GET https://archive.translator.ncats.io/archive/publish/yeast-sri-reference-kg-tsv/1.3 HTTP status 504 Gateway Timeout

jeffhhk commented 3 years ago

This morning in response to clicking "Done Uploading", I got the following HTTP status 200 confirmation in around 6.5 seconds:

Confirmation of Submission

File Set '1.9' of 'yeast-sri-reference-kg-tsv' submitted by 'Jeff Henrikson' is being processed and should soon be available for downloading from the home page .

So regarding the HTTP request staying open for the duration of processing, this issue is resolved.

There may be remaining issues with OOM during processing itself. I will leave it to your discretion whether or not to leave this issue open as-is or close and open a new more specific issue for OOM during processing.

RichardBruskiewich commented 3 years ago

Fixed(?)