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NCATSTranslator / Ordering-Organizing

ARS Level O&O
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MolePro gave same results whether knowledge type is inferred or not inferred. #26

Closed sharatisrani closed 1 year ago

sharatisrani commented 1 year ago

MolePro gave same results inferred or not inferred.pptx

{ "message": { "query_graph": { "nodes": { "gene": { "categories": [ "biolink:Gene" ], "ids": [ "NCBIGene:727897" ] }, "Chemical": { "categories": [ "biolink:ChemicalEntity" ] } }, "edges": { "t_edge": { "object": "gene", "subject": "Chemical", "predicates": [ "biolink:affects" ], "knowledge_type": "inferred", "qualifier_constraints": [ { "qualifier_set": [ { "qualifier_type_id": "biolink:object_aspect_qualifier", "qualifier_value": "activity_or_abundance" }, { "qualifier_type_id": "biolink:object_direction_qualifier", "qualifier_value": "increased" } ] } ] } } } } }

sharatisrani commented 1 year ago

KPs not reqd to do inferred.

sandrine-m commented 1 year ago

Re: O&O of 2023/07/20: Thank you for bringing this issue to my attention. I am not sure I understand the question and how it is linked to the json object below? I looked at a query related to the json shared here and from ARAX and I can see in the provenance info:

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MolePro reports knowledge found across the knowledge base we have of ingested sources (Knowledge Provider). Here, all primary knowledge sources are listed. MolePro does not infer knwoledge for the qualified predicate affects. MolePro does provide a few inferred edges from correlations in Experimental datasets (CMAP, CTRP...) that are reported with _correlatedwith predicate and primary_knowledge_source:MolePro.