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NCATSTranslator / Relay

Autonomous relay system for NCATS Biomedical Data Translator
MIT License
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Update ARS to message asynchronous query status #210

Closed sstemann closed 3 months ago

sstemann commented 3 years ago

TRAPI/async endpoints send http code 200 to indicate initial receipt with the internal TRAPI message "running".

ARS needs to handle this.

sstemann commented 2 years ago

ARAGORN reported this issue recently, Mark will look into it

Genomewide commented 2 years ago

I was just working on some queries to try and get data through the ARAX interface for PMI so that we could be as thorough as possible for the drug repurposing case work. ARAX and ARAGORN were showing no results for gene-gene hits which was suspicious. Pulling up the results later shows that it was not done but the interface showed zero results and then updated to some results when finished running.

Genomewide commented 2 years ago

More information on this. When submitting the TRAPI Response identifier, ARAX shows code 200 and status done when it is not done.

If you try to return ARAX results then you get "Query commenced. Will send result to https://ars.transltr.io/ars/api/messages/0551022b-a3c2-4ac5-acf7-29cc29725f2a"

And message: "Returned response is not TRAPI: {'description': 'Query commenced. Will send result to https://ars.transltr.io/ars/api/messages/0551022b-a3c2-4ac5-acf7-29cc29725f2a'}"

Waiting longer for the query to complete returns the same code 200 and status done, now shows the results.

This makes it very difficult to know when the query is run. ARAGON may also be doing this, but it is running the query fast enough that the error does not always show up.

MarkDWilliams commented 3 months ago

This has been resolved