NCATSTranslator / Text-Mining-Provider-Roadmap

Roadmap and issue tracking for the NCATS Translator Text Mining Provider
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Switch to new biolink:entity_negatively/positively_regulates_entity predicates #80

Open bill-baumgartner opened 3 years ago

bill-baumgartner commented 3 years ago

Describe the bug Our text-mined KG uses the now deprecated biolink:negatively_regulates_entity_to_entity and biolink:positively_regulates_entity_to_entity predicates. It appears as though these have been changed in a recent Biolink release to biolink:entity_negatively_regulates_entity and biolink:entity_positively_regulates_entity, respectively.

Expected behavior Replace the usage of the old predicates in our text-mined KG with the new predicates, as referenced above.

This issue is related to https://github.com/NCATSTranslator/testing/issues/28, although it is not the reason for the zero hits from the text-mined KP (which would show up under BTE) as the Service Provider seems to be automatically mapping from the old to the new predicates.