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NCATSTranslator / minihackathons

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Unsecret no results in Workflow A.1 #132

Closed vgardner-renci closed 3 years ago

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=7e23ddd1-ab6a-46c3-a67e-86f0ebff196b

ROHBTB2-entity_neg_reg_entity-Gene

image

vgardner-renci commented 3 years ago 

{
  "description": "Success. 0 results.",
  "logs": [
    {
      "level": "INFO",
      "message": "Query time: 47ms"
    },
    {
      "level": "INFO",
      "message": "MolePro results: 0"
    },
    {
      "level": "INFO",
      "message": "MolePro response status: #\"HTTP/1.1 200 OK\""
    }
  ],
  "message": {
    "knowledge_graph": {
      "edges": {},
      "nodes": {}
    },
    "results": []
  },
  "query_graph": {
    "edges": {
      "e01": {
        "object": "n0",
        "predicates": [
          "biolink:entity_negatively_regulates_entity"
        ],
        "subject": "n1"
      }
    },
    "nodes": {
      "n0": {
        "categories": [
          "biolink:Gene"
        ],
        "ids": [
          "NCBIGene:23221"
        ]
      },
      "n1": {
        "categories": [
          "biolink:Gene"
        ]
      }
    }
  },
  "status": "Success",
  "validation_result": {
    "message": "",
    "n_edges": 0,
    "n_nodes": 0,
    "size": "1 kB",
    "status": "PASS",
    "version": "1.1.1"
  }
}
vgardner-renci commented 3 years ago

@webyrd request for update

webyrd commented 3 years ago

Will triage by August 12, 2021.

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=9b079596-4ab0-4dab-9039-aeda08c384ed

image


  "callback": "http://0.0.0.0:8000/ars/api/messages/94d8a5f8-0bb1-4c75-8308-425d180a1452",
  "logs": [
    {
      "level": "INFO",
      "message": "ARS info: <html>\r\n<head><title>504 Gateway Time-out</title></head>\r\n<body>\r\n<center><h1>504 Gateway Time-out</h1></center>\r\n</body>\r\n</html>\r\n"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Server: awselb/2.0"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Date: Thu, 12 Aug 2021 02:00:20 GMT"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Content-Type: text/html"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Content-Length: 132"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Connection: keep-alive"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.reason: Gateway Time-out"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.url: https://medikanren-trapi.ci.transltr.io/query"
    }
  ],
  "message": {
    "query_graph": {
      "edges": {
        "e01": {
          "object": "n0",
          "predicates": [
            "biolink:entity_negatively_regulates_entity"
          ],
          "subject": "n1"
        }
      },
      "nodes": {
        "n0": {
          "categories": [
            "biolink:Gene"
          ],
          "ids": [
            "NCBIGene:23221"
          ]
        },
        "n1": {
          "categories": [
            "biolink:Gene"
          ]
        }
      }
    }
  },
  "validation_result": {
    "message": "Returned response is not TRAPI: <html>\r\n<head><title>504 Gateway Time-out</title></head>\r\n<body>\r\n<center><h1>504 Gateway Time-out</h1></center>\r\n</body>\r\n</html>\r\n",
    "size": "2 kB",
    "status": "NA",
    "version": "1.1.1"
  },
  "araxui_provider": "ARS",
  "araxui_response": "94d8a5f8-0bb1-4c75-8308-425d180a1452"
}
webyrd commented 3 years ago

Immediately returns with 0 results when I re-run query:

{"description":"Success. 0 results.","logs":[{"level":"INFO","message":"Query time: 49ms"},{"level":"INFO","message":"MolePro results: 0"},{"level":"INFO","message":"MolePro response status: #\"HTTP/1.1 200 OK\""}],"message":{"knowledge_graph":{"edges":{},"nodes":{}},"results":[]},"query_graph":{"edges":{"e01":{"object":"n0","predicates":["biolink:entity_negatively_regulates_entity"],"subject":"n1"}},"nodes":{"n0":{"categories":["biolink:Gene"],"ids":["NCBIGene:23221"]},"n1":{"categories":["biolink:Gene"]}}},"status":"Success"} http_code=200%

Will investigate why no answers are returned, and try to fix by relay.

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=58b7d225-8e9b-453e-9f8b-3ebe640eaaca

vgardner-renci commented 3 years ago

Query retired from WF-A