NCATSTranslator / minihackathons

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Textmining no results on Workflow A.2 #138

Closed vgardner-renci closed 3 years ago

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=84fc74fb-03d9-4fec-a2f4-6293955bb2b0

ROHBTB2-neg_reg_entity_to_entity-Gene

image

vgardner-renci commented 3 years ago

{
  "callback": "http://0.0.0.0:8000/ars/api/messages/6a02d7d6-d651-4402-a9b6-fda214062c08",
  "max_results": 100,
  "message": {
    "query_graph": {
      "edges": {
        "e01": {
          "object": "n0",
          "predicates": [
            "biolink:entity_negatively_regulates_entity",
            "biolink:negatively_regulates_entity_to_entity"
          ],
          "subject": "n1"
        }
      },
      "nodes": {
        "n0": {
          "categories": [
            "biolink:Gene"
          ],
          "ids": [
            "NCBIGene:23221"
          ]
        },
        "n1": {
          "categories": [
            "biolink:Gene"
          ]
        }
      }
    }
  },
  "validation_result": {
    "message": "",
    "size": "1 kB",
    "status": "PASS",
    "version": "1.1.1"
  }
}
vgardner-renci commented 3 years ago

Sent query to ARS, Textmining results "Done / No results"

New PK: f486edee-d674-4e55-98a8-1f5593d79219

image


{
  "logs": [
    {
      "code": null,
      "level": "DEBUG",
      "message": "BTE identified 2 QNodes from your query graph",
      "timestamp": "2021-07-29T12:11:45.178Z"
    },
    {
      "code": null,
      "level": "DEBUG",
      "message": "BTE identified 1 QEdges from your query graph",
      "timestamp": "2021-07-29T12:11:45.178Z"
    },
    {
      "code": null,
      "level": "DEBUG",
      "message": "BTE identified your query graph as a 1-depth query graph",
      "timestamp": "2021-07-29T12:11:45.178Z"
    },
    {
      "code": null,
      "level": "DEBUG",
      "message": "REDIS cache is  enabled.",
      "timestamp": "2021-07-29T12:11:45.196Z"
    },
    {
      "code": null,
      "level": "DEBUG",
      "message": "BTE is trying to find SmartAPI edges connecting from Gene to Gene with predicate undefined",
      "timestamp": "2021-07-29T12:11:45.199Z"
    },
    {
      "code": null,
      "level": "WARNING",
      "message": "BTE didn't find any smartapi edges corresponding to e01",
      "timestamp": "2021-07-29T12:11:45.200Z"
    },
    {
      "code": null,
      "level": "WARNING",
      "message": "BTE didn't find any bte edges for this batch. Your query terminates.",
      "timestamp": "2021-07-29T12:11:45.200Z"
    }
  ],
  "message": {
    "knowledge_graph": {
      "edges": {},
      "nodes": {}
    },
    "query_graph": {
      "edges": {
        "e01": {
          "object": "n0",
          "predicates": [
            "biolink:entity_negatively_regulates_entity",
            "biolink:negatively_regulates_entity_to_entity"
          ],
          "subject": "n1"
        }
      },
      "nodes": {
        "n0": {
          "categories": [
            "biolink:Gene"
          ],
          "id": [
            "NCBIGene:23221"
          ],
          "ids": [
            "NCBIGene:23221"
          ],
          "is_set": false
        },
        "n1": {
          "categories": [
            "biolink:Gene"
          ],
          "is_set": false
        }
      }
    },
    "results": []
  },
  "validation_result": {
    "message": "",
    "n_edges": 0,
    "n_nodes": 0,
    "provenance_summary": {
      "n_sources": 0,
      "predicate_counts": {},
      "provenance_counts": {}
    },
    "size": "3 kB",
    "status": "PASS",
    "version": "1.1.1"
  },
  "araxui_provider": "ARS",
  "araxui_response": "9ce58044-dc44-47da-8970-16c711ba87d3"
}
tursynay commented 3 years ago

Closing this issue. Chris B will create a new issue.

tursynay commented 3 years ago

@cbizon , for your reference