NCATSTranslator / minihackathons

MIT License
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Aragorn no results on Workflow C.1 #167

Closed vgardner-renci closed 3 years ago

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=786c8995-8457-4892-bf01-830738a27d4c

image


  "callback": "http://0.0.0.0:8000/ars/api/messages/786c8995-8457-4892-bf01-830738a27d4c",
  "message": {
    "query_graph": {
      "edges": {
        "e00": {
          "object": "n01",
          "predicates": [
            "biolink:related_to"
          ],
          "subject": "n00",
          "id": "e00",
          "parentdivnum": 99999,
          "trapiversion": "1.1 (presumed)",
          "source": "n00",
          "target": "n01",
          "type": "biolink:related_to"
        }
      },
      "nodes": {
        "n00": {
          "categories": [
            "biolink:ChemicalSubstance"
          ],
          "parentdivnum": 99999,
          "trapiversion": "1.1 (presumed)",
          "fulltextname": "n00",
          "id": "n00",
          "name": "biolink:ChemicalSubstances?"
        },
        "n01": {
          "categories": [
            "biolink:Disease"
          ],
          "ids": [
            "MONDO:0005301"
          ],
          "parentdivnum": 99999,
          "trapiversion": "1.1 (presumed)",
          "fulltextname": "n01",
          "id": "n01",
          "name": "MONDO:0005301"
        }
      }
    }
  },
  "validation_result": {
    "message": "",
    "size": "1 kB",
    "status": "PASS",
    "version": "1.1.1"
  },
  "araxui_provider": "ARS",
  "araxui_response": "786c8995-8457-4892-bf01-830738a27d4c",
  "schema_version": "1.1 (presumed)"
}
cbizon commented 3 years ago

In progress, check in August 26

vgardner-renci commented 3 years ago

https://arax.ncats.io/index.html?source=ARS&id=70ce74f6-eeba-419c-8611-d02ee36afcde


{
  "logs": [
    {
      "code": null,
      "level": "WARNING",
      "message": "warning: empty returned",
      "timestamp": "2021-08-25T17:17:47.433275"
    },
    {
      "code": null,
      "level": "ERROR",
      "message": "No results to coalesce",
      "timestamp": "2021-08-25T17:17:47.471873"
    },
    {
      "code": null,
      "level": "ERROR",
      "message": "answer_coalesce error: HTML error status code 422 returned.",
      "timestamp": "2021-08-25T17:17:47.476690"
    },
    {
      "code": null,
      "level": "WARNING",
      "message": "warning: empty returned",
      "timestamp": "2021-08-25T17:17:47.598386"
    },
    {
      "code": null,
      "level": "WARNING",
      "message": "warning: empty returned",
      "timestamp": "2021-08-25T17:17:47.645667"
    },
    {
      "code": null,
      "level": "WARNING",
      "message": "warning: empty returned",
      "timestamp": "2021-08-25T17:17:47.686496"
    }
  ],
  "message": {
    "knowledge_graph": {
      "edges": {},
      "nodes": {}
    },
    "query_graph": {
      "edges": {
        "e00": {
          "constraints": null,
          "object": "n01",
          "predicates": [
            "biolink:has_real_world_evidence_of_association_with"
          ],
          "relation": null,
          "subject": "n00"
        }
      },
      "nodes": {
        "n00": {
          "categories": [
            "biolink:ChemicalEntity"
          ],
          "constraints": null,
          "ids": null,
          "is_set": false
        },
        "n01": {
          "categories": [
            "biolink:Disease"
          ],
          "constraints": null,
          "ids": [
            "MONDO:0005301"
          ],
          "is_set": false
        }
      }
    },
    "results": []
  },
  "status": null,
  "validation_result": {
    "message": "",
    "n_edges": 0,
    "n_nodes": 0,
    "provenance_summary": {
      "n_sources": 0,
      "predicate_counts": {},
      "provenance_counts": {}
    },
    "size": "3 kB",
    "status": "PASS",
    "version": "1.1.1"
  },
  "workflow": [
    "lookup",
    "enrich_results",
    "connect_knodes",
    "score"
  ],
  "araxui_provider": "ARS",
  "araxui_response": "c3dc972a-3411-44dd-b327-bbc308474f0f"
}
cbizon commented 3 years ago

I am now getting results when I hit aragorn directly (about 1000 in about a minute). I'll leave this open until we see the same thing via the ARS.

vgardner-renci commented 3 years ago

Latest tracker shows results.