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NCATSTranslator / minihackathons

MIT License
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Unsecret no results Workflow A.8 #206

Closed vgardner-renci closed 3 years ago

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=cd380ba8-7688-4b1c-9156-8fc73c1f2e7a

https://github.com/NCATSTranslator/minihackathons/blob/main/2021-12_demo/workflowA/A.8_EGFR_simple.json

image


{
  "callback": "http://0.0.0.0:8000/ars/api/messages/d1fd7158-9f27-4c83-8fb1-89704546c163",
  "logs": [
    {
      "level": "INFO",
      "message": "ARS info: <html>\r\n<head><title>504 Gateway Time-out</title></head>\r\n<body>\r\n<center><h1>504 Gateway Time-out</h1></center>\r\n</body>\r\n</html>\r\n"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Server: awselb/2.0"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Date: Thu, 12 Aug 2021 01:48:27 GMT"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Content-Type: text/html"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Content-Length: 132"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.Connection: keep-alive"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.reason: Gateway Time-out"
    },
    {
      "level": "INFO",
      "message": "ARS info: tr_ars.url: https://medikanren-trapi.ci.transltr.io/query"
    }
  ],
  "message": {
    "query_graph": {
      "edges": {
        "e0": {
          "object": "n1",
          "predicates": [
            "biolink:decreases_abundance_of",
            "biolink:decreases_activity_of",
            "biolink:decreases_expression_of",
            "biolink:decreases_synthesis_of",
            "biolink:increases_degradation_of",
            "biolink:disrupts",
            "biolink:entity_negatively_regulates_entity"
          ],
          "subject": "n0"
        }
      },
      "nodes": {
        "n0": {
          "categories": [
            "biolink:SmallMolecule"
          ],
          "name": "Small Molecule"
        },
        "n1": {
          "ids": [
            "NCBIGene:1956"
          ],
          "name": "EGFR"
        }
      }
    }
  },
  "validation_result": {
    "message": "Returned response is not TRAPI: <html>\r\n<head><title>504 Gateway Time-out</title></head>\r\n<body>\r\n<center><h1>504 Gateway Time-out</h1></center>\r\n</body>\r\n</html>\r\n",
    "size": "2 kB",
    "status": "NA",
    "version": "1.1.1"
  },
  "araxui_provider": "ARS",
  "araxui_response": "d1fd7158-9f27-4c83-8fb1-89704546c163"
}
webyrd commented 3 years ago

Immediately returns with 0 answers when I just tried it.

{"description":"Success. 0 results.","logs":[{"level":"INFO","message":"Query time: 6ms"},{"level":"INFO","message":"MolePro results: 0"},{"level":"INFO","message":"MolePro response status: #\"HTTP/1.1 200 OK\""}],"message":{"knowledge_graph":{"edges":{},"nodes":{}},"results":[]},"query_graph":{"edges":{"e0":{"object":"n1","predicates":["biolink:decreases_abundance_of","biolink:decreases_activity_of","biolink:decreases_expression_of","biolink:decreases_synthesis_of","biolink:increases_degradation_of","biolink:disrupts","biolink:entity_negatively_regulates_entity"],"subject":"n0"}},"nodes":{"n0":{"categories":["biolink:SmallMolecule"],"name":"Small Molecule"},"n1":{"ids":["NCBIGene:1956"],"name":"EGFR"}}},"status":"Success"} http_code=200%

Will investigate why no answers are returned and attempt to fix by the relay.

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=718eb8c4-5fbc-475c-a5f4-34ff390f28fe

vgardner-renci commented 3 years ago

Query retired from WF-A