NCATSTranslator / minihackathons

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Explanatory no results Workflow A.9 #210

Closed vgardner-renci closed 2 years ago

vgardner-renci commented 3 years ago

https://github.com/NCATSTranslator/minihackathons/blob/main/2021-12_demo/workflowA/A.9_EGFR_advanced.json

image


{
  "description": "Unsupported query structure.",
  "logs": [],
  "message": {
    "knowledge_graph": {
      "edges": {},
      "nodes": {}
    },
    "query_graph": {
      "edges": {
        "e0": {
          "object": "n1",
          "predicates": [
            "biolink:decreases_abundance_of",
            "biolink:decreases_activity_of",
            "biolink:decreases_expression_of",
            "biolink:decreases_synthesis_of",
            "biolink:increases_degradation_of",
            "biolink:disrupts",
            "biolink:entity_negatively_regulates_entity"
          ],
          "subject": "n0"
        }
      },
      "nodes": {
        "n0": {
          "categories": [
            "biolink:SmallMolecule"
          ],
          "constraints": [
            {
              "id": "biolink:highest_FDA_approval_status",
              "name": "highest FDA approval status",
              "operator": "==",
              "value": "regular approval"
            }
          ],
          "name": "Small Molecule"
        },
        "n1": {
          "ids": [
            "NCBIGene:1956"
          ],
          "name": "EGFR"
        }
      }
    },
    "results": []
  },
  "status": "Unsupported",
  "validation_result": {
    "message": "",
    "n_edges": 0,
    "n_nodes": 0,
    "provenance_summary": {
      "n_sources": 0,
      "predicate_counts": {},
      "provenance_counts": {}
    },
    "size": "2 kB",
    "status": "PASS",
    "version": "1.1.1"
  },
  "araxui_provider": "ARS",
  "araxui_response": "5ebc25af-26a9-464f-a83c-72faa7876a19"
}
pg427 commented 3 years ago

Explanatory Agent currently doesn't support batch predicates. We are in the process of a major design update and would be able to answer these queries post-implementation (expected by September Relay).

P.S : We are still under discussion regarding the implementation of constraints within the query graph and will have more updates on that later.

vgardner-renci commented 3 years ago

https://arax.ncats.io/?source=ARS&id=eaef59d1-ad7c-423c-b67d-ec02ca227cd4

vgardner-renci commented 2 years ago

Query retired from WF-A