improving agent inverting direction?

[cbizon]

Sending this query to the ARS:

"message": {
        "query_graph": {
            "edges": {
                "e01": {
                    "object": "n0",
                    "subject": "n1",
                    "predicates": [
                        "biolink:entity_positively_regulates_entity"
                    ]
                }
            },
            "nodes": {
                "n0": {
                    "ids": [
                        "NCBIGene:23221"
                    ],
                    "categories": [
                        "biolink:Gene"
                    ]
                },
                "n1": {
                    "categories": [
                        "biolink:Gene"
                    ]
                }
            }
        }
    }

Results on the arax UI: https://arax.ncats.io/?source=ARS&id=4f29cf84-53af-4099-b4fa-22e9b678eb90

The query is asking (?gene)-[entity_positively_regulates_entity]->(RHOBTB2)

But Improving Agent is returning inverted results, i.e. (RHOBTB2)-[entity_positively_regulates_entity]->(?gene)

[vgardner-renci]

@brettasmi & @suihuang-ISB request for update

[vgardner-renci]

@brettasmi & @suihuang-ISB request for update

[brettasmi]

This is an artifact of older code to allow more answers to come back when things were less standardized, i.e. all our searches use undirected edges. This is usually not an issue given two different node types, but you've surfaced a case where a directed edge matters between two of the same node type.

I've created an issue to address this.

[tursynay]

@brettasmi Asking for completion date, please update

[jenndoug]

Mid to late September

[jh111]

@brettasmi This is not blocking the demo, so I'm removing the demoscript tag. I'm leaving it open as you may want to address it in the future.