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NCATSTranslator / opposites

This repo serves as a central point of coordination of Translator and external efforts to compile conceptual and relational opposites
MIT License
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Continue development of logic-based approaches for assigning oppositeness between domain entities #4

Open bill-baumgartner opened 3 years ago

bill-baumgartner commented 3 years ago

This has been demonstrated for phenotypes (see Köhler et al).

Work under this issue may involve extending the approach to similar axiomatized ontologies, e.g. GO, ChEBI, etc.

sierra-moxon commented 3 years ago

(just some listings to demonstrate functionality)

cmungall commented 3 years ago

I would like to start pushing this upstream as far as possible - have ontologies provide these as part of their releases, driven by their DOSDPs.

Many of these will fall within the ontologies used and produce by Monarch - for all the phenotype ontologies, @matentzn is the key contact for the upheno design patterns. I can coordinate with him on the best way to integrate these in.

for CHEBI and GO, I can work with @balhoff on getting the relevant axioms either directly into the ontology or a layer that can be imported.

TBD: is our recommendation for the ontology providers to state oppositeness in both directions? As these are modeled with an annotation property we don't get this inference from OWL.

matentzn commented 3 years ago

Great, would be awesome to get these onto the ontologies! Definitely in!