ChemicalEntity (PUBCHEM:644073) <related_to> BiologicalProcessOrActivity, Gene, Pathway <related_to> DiseaseOrPhenotypicFeature (HP:0000217)

NCATSTranslator / testing

Materials and tools for testing Translator components

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ChemicalEntity (PUBCHEM:644073) <related_to> BiologicalProcessOrActivity, Gene, Pathway <related_to> DiseaseOrPhenotypicFeature (HP:0000217) #180

Open sstemann opened 2 years ago

sstemann commented 2 years ago

Query: subutexDryMouth2.json PK: 91c16946-8435-4263-8fd7-42464fc7dd04

colleenXu commented 2 years ago

It looks like there was an issue connecting between ARS and BTE? @andrewsu @MarkDWilliams

Here's BTE's response. There are 17 results. standup_3_15.txt

Note that many are UMLS terms that the SRI node normalizer does not retrieve labels for. @cbizon. This is a known issue for BTE, and we've noticed this issue. We'd like labels for all curies that we use, when possible... https://github.com/TranslatorSRI/NodeNormalization/issues/119

cbizon commented 2 years ago

I reran the query here: https://arax.ncats.io/?r=7862730d-822d-42dd-8cfb-4317251706d1

Got results from aragorn and BTE this time

andrewsu commented 2 years ago

Relative to last week's query (with NamedThing as the intermediate node), we again got IRF5 (now result 5, was result 224 in the previous results). Not sure why CD69 dropped out (result 68 in the previous results) -- we will check on this. Also noting that we previously also retrieved "Mitogen-Activated Protein Kinases" (formerly result 69) and "Na(+)-K(+)-Exchanging ATPase" (formerly result 70), which might also be interesting? Both are biolink:Protein. (Apologies, I have to miss today's meeting...)