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NCATSTranslator / testing

Materials and tools for testing Translator components
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Second Time for: SmallMolecule <treats, disrupts, prevents, affects> PhenotypicFeature (HP:0011015 Abnormal blood glucose concentration) #207

Closed sstemann closed 8 months ago

sstemann commented 2 years ago

This query was also run on 5/23/2022 as part of issue #203. The major changes are:

  1. ARAGORN - originally returned 0 results, now returns 641
  2. xARA - originally returned 3988 results, now returns 5914
  3. Unsecret - originally returned results, now errors
  4. CHP is now returning an error

Query: Blood_Glucose_Concen.json PK: 4b93c698-1206-4657-b42d-f04c6cfde424

image

andrewsu commented 2 years ago

BTE hasn't made any changes since #203 was run. As @colleenXu pointed out BTE will successful return results if "hyperglycemia" (MONDO:0002909 / UMLS:C0020456 / HP:0003074) is used in the query. Because we don't have any resources that link to the parent term "Abnormal blood glucose concentration" (HP:0011015; the term used here), and because we have not implemented a generic ontology-based node expansion yet (issue linked in #203), BTE will not return results for this query yet. (Apologies, I have to miss today's standup meeting...)

sstemann commented 8 months ago

works with HPO in CI https://ui.ci.transltr.io/main/results?l=Abnormal%20Blood%20Glucose%20Concentration&i=HP:0011015&t=0&q=313574d3-8d3b-446c-97e2-132d1b918bfb