NCATSTranslator / testing

Materials and tools for testing Translator components
1 stars 9 forks source link

Comparing creative mode: What chemical entity treats Alzheimer's (MONDO:0004975) #219

Open sstemann opened 1 year ago

sstemann commented 1 year ago

Query Inferred/Creative: mvpAlz.json

Inferred/Creative PK: 24c97e6b-cfb0-401f-8168-a281b1780c5e

Query Standard: mvpAlzStd.json

Standard PK: de70a93f-4b56-4a21-8949-2cc63da330f6

These were run against ars-prod. Inferred screenshot is on the left. image

edeutsch commented 1 year ago

For ARAX at least, for the standard query, it appears the overall system was seeing a lot of load and many queries just timed out:

image

image

colleenXu commented 1 year ago

Updated screenshots:

Inferred: Screen Shot 2022-07-25 at 11 58 55 PM

Standard: Screen Shot 2022-07-26 at 12 00 52 AM

dkoslicki commented 1 year ago

Here's the culprit for the lack of ARAX results for the lookup query: There are so many results that all the timeouts are being exceeded

 2022-07-25T20:35:09.072711 WARNING:    infores:biothings-explorer: Query timed out after 120 seconds
   2022-07-25T20:35:09.072951 WARNING:    infores:biothings-multiomics-clinical-risk: Query timed out after 120 seconds
   2022-07-25T20:35:09.073064 WARNING:    infores:biothings-multiomics-wellness: Query timed out after 120 seconds
   2022-07-25T20:35:09.073168 WARNING:    infores:icees-dili: Query timed out after 120 seconds
   2022-07-25T20:35:09.073264 WARNING:    infores:spoke: Query timed out after 120 seconds
   2022-07-25T20:35:09.073358 WARNING:    infores:icees-asthma: Query timed out after 120 seconds
   2022-07-25T20:35:09.073562 WARNING:    infores:cohd: Query timed out after 120 seconds
   2022-07-25T20:35:09.073709 WARNING:    infores:molepro: Query timed out after 120 seconds
   2022-07-25T20:35:09.073807 WARNING:    infores:rtx-kg2: Query timed out after 600 seconds
dkoslicki commented 1 year ago

Here are the ARAX lookup results when restricting to only the KG2 KP (so timeouts aren't exceeded): https://arax.ncats.io/?r=54080