Comparing creative mode: What chemical entity treats chronic kidney disease (MONDO:0005300)

[sstemann]

Query Inferred/Creative: MVPckd.json

Inferred/Creative PK: 6c7631a8-9d45-41d8-8a9c-85f06d934ed0

Query Standard: MVPckdSTD.json

Standard PK: 46673bfb-63e2-4054-9d6f-7dceffd8818c

These were run against ars-prod. Inferred screenshot is on the left.

[sstemann]

@dkoslicki i did notice that if you run the MVP for a synonym of chronic kidney disease (such as end stage renal failure) ARAX does return in creative mode: https://arax.ncats.io/?r=c5c0cc2a-1917-48f3-8507-a22ab40ca5fb

[cbizon]

We've been debugging ARAGORN, the version on staging handles this query fine (creative mode): https://arax.ncats.io/?r=873dfb75-8c36-4930-a6f1-3241b2fcd8bc

[dkoslicki]

That is interesting @sstemann , it appears that our model did not have MONDO:0005300, but does have MONDO:0004375, so this appears to be a synonym issue. I will post a ticket about it.

[sstemann]

@cbizon taking a look at the top few results, it looks like these results are for diabetic kidney disease, when i look at the synonyms for this i dont see MONDO:0005300. perhaps this intentional.

[cbizon]

There's a mix ( eg 2 & 3 are for 5300 ). The diabetic kidney disease ones are because that is a subclass of chronic kidney disease, so KPs are responding with information about the subclass as we expect them to. In the past we had decided not to explicitly relate those kinds of subclass results back to the input in the answer. but maybe that's wrong in the context of the creative queries?

[cbizon]

P.S. this version of aragorn is now running on prod

[sstemann]

looks to be working on UI Test: https://ui.test.transltr.io/main/results?l=Chronic%20Kidney%20Disease&i=MONDO:0005300&t=0&q=5c7df930-6ea1-4eca-b5eb-1f29af78c1d3