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NCBI-Codeathons / super-minityper

Long Read SVs
MIT License
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[docker] Generate docker image with minigraph and CGA #2

Open tijyojwad opened 5 years ago

tijyojwad commented 5 years ago

Generate a dockerfile containing minigraph and Clara Genomics Anaylysis SDK that can be deployed onto the DNANexus platform. This will be used for two sub projects -

  1. Analysis of SVs by aligning reads to a GFA using minigraph and answering the question "Does this SV exist in the graph?"
  2. Using CGA components to generate a GFA for a new set of reads, or to add cuda support to minigraph so that the alignment can be done faster.
edawson commented 5 years ago

the minigraph dockerfile is now available at dockerhub ( erictdawson/minigraph )

edawson commented 5 years ago

@gigony how goes the CGA dockerfile?