For the analysis steps in the involving magicblast or rpstblastn the sequences are pooled since these tolls are really good dealing with heaps of data . Therefore, these sequences have to be collected in each iteration and than split again. However, the current concatenation of each magicblast and vdb-dump leads to the loss of information of the aligned query.
ToDo:
This step needs to parse the magicblast output prior to the vdb-dump and than dump the new reads for each contig.
For the analysis steps in the involving magicblast or rpstblastn the sequences are pooled since these tolls are really good dealing with heaps of data . Therefore, these sequences have to be collected in each iteration and than split again. However, the current concatenation of each magicblast and vdb-dump leads to the loss of information of the aligned query.
ToDo: This step needs to parse the magicblast output prior to the vdb-dump and than dump the new reads for each contig.