For the analysis steps in the involving magicblast or rpstblastn the sequences are pooled since these tolls are really good dealing with heaps of data . Therefore, these sequences have to be collected in each iteration and than split again. However, the current concatenation of each magicblast and vdb-dump leads to the loss of information of the aligned query.
ToDo:
This step needs to parse the magicblast output prior to the vdb-dump and than dump the new reads for each contig.
janpb
commented
6 years ago
For the analysis steps in the involving magicblast or rpstblastn the sequences are pooled since these tolls are really good dealing with heaps of data . Therefore, these sequences have to be collected in each iteration and than split again. However, the current concatenation of each magicblast and vdb-dump leads to the loss of information of the aligned query.
ToDo: This step needs to parse the magicblast output prior to the vdb-dump and than dump the new reads for each contig.