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NCBI-Hackathons
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GeneFamTaxScan
A framework and family of scripts to evaluate molecular evolution (and misannotation) of gene ortholog groups, between higher taxa.
MIT License
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Step 3 must be run twice and include header (put in the same bash file)
#10
DCGenomics
opened
6 years ago
1
Comparison between the output of Step 2 and the output of Step #4
#9
DCGenomics
opened
6 years ago
0
Port to remote using Entrez Direct
#8
PhyloGrok
opened
6 years ago
0
Retrieve all taxIDs included in "Metazoa", excluding "Vertebrates" and "Insects"
#7
PhyloGrok
closed
6 years ago
2
Retrieve "ortholog gene group" and "exon count" from a given geneID text report
#6
PhyloGrok
opened
6 years ago
1
Extend to R import
#5
DCGenomics
opened
6 years ago
0
Retrieve "Gene" and "RefSeq Protein" sequences from Reference taxa of interest
#4
PhyloGrok
closed
6 years ago
3
Summary of Genome Assembly Stats
#3
PhyloGrok
closed
6 years ago
3
BLAST search contig/assembly-level genome sequence from a taxonomic subset
#2
PhyloGrok
opened
6 years ago
13
Retreive gene locus fasta by parsing RefSeq chromosome fasta/ with taxonomy
#1
PhyloGrok
closed
6 years ago
7