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NCBI-Hackathons / GeneHummus

An Automated Pipeline to Classify Gene Families based on Protein Domain Organization using Auxin Response Factors in Legumes as an Example
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SPP Extract Issue #5

Closed laitanawe closed 5 years ago

laitanawe commented 5 years ago

I'm unable to obtain species from ARFids because it says that the request is too large. spp = extract_spp(my_values_subset) Error in entrez_check(response) : HTTP failure 414, the request is too large. For large requests, try using web history as described in the rentrez tutorial

jdieramon commented 5 years ago

A stable version of this package is available on CRAN and can be installed directly from there: install.packages("geneHummus") It should work fine. Give it a try and let us know if you find any problem.