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NCBI-Hackathons / Master_gff3_parser

Convert sequence IDs between ucsc/refseq/genbank
MIT License
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setting UC for output format gives gb formatted ids #6

Open childers opened 7 years ago

childers commented 7 years ago

command: seqconv convert --ref Myoluc2.0 --out uc ref_Myoluc2.0_top_level.gff3.gz

GL430047    Gnomon  exon    1591810 1591932 .   +   .   ID=id351777;Parent=rna30996;Dbxref=GeneID:102441866,Genbank:XM_014465163.1;gbkey=mRNA;gene=MYO9B;product=myosin IXB%2C transcript variant X4;transcript_id=XM_014465163.1
GL430047    Gnomon  exon    1592894 1593043 .   +   .   ID=id351778;Parent=rna30996;Dbxref=GeneID:102441866,Genbank:XM_014465163.1;gbkey=mRNA;gene=MYO9B;product=myosin IXB%2C transcript variant X4;transcript_id=XM_014465163.1