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NCBI-Hackathons / NovoGraph

NovoGraph: building whole genome graphs from long-read-based de novo assemblies
MIT License
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enhancement: disk space improvement #37

Closed TorHou closed 4 years ago

TorHou commented 4 years ago

Makes the disk space footprint considerably smaller by two small changes.

  1. By default doesn't save so many files, which are mainly needed for debugging. These outputs can still be generated by setting a CLI flag.
  2. Zips the output of BAM2Alignment, which makes execution slightly slower, but this step is not the bottleneck.