NCBI-Hackathons / NovoGraph

NovoGraph: building whole genome graphs from long-read-based de novo assemblies
MIT License
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re-parallelize the MAFFT layer #8

Closed nathandunn closed 6 years ago

nathandunn commented 7 years ago

The parallel command chokes when the number of entries is too high (though is fine for a single chromosome). May not be too big of a problem.

Moved back to doing sequentially, but with auto-thread count. However, that seems really slow.

Parallelization per chromosome or running through a proper parallelization language would make the most sense.