test CNV calling in PennCNV

NCBI-Hackathons / Scan2CNV

MIT License

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test CNV calling in PennCNV #23

Closed ekarlins closed 7 years ago

ekarlins commented 7 years ago

We need to add the code for CNV calling using PennCNV. We should have all of the input files now. Check online documentation and help pages of PennCNV perl scripts (-h) to figure out commands to run.

ekarlins commented 7 years ago

Code to run PennCNV added to "scripts/Snakefile_one_samp".