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NCBI-Hackathons / Scan2CNV

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normalization in crlmm #41

Open ekarlins opened 7 years ago

ekarlins commented 7 years ago

Starting a new issue to show how intensity normalization is done in the R package crlmm.

You can see the code here: https://github.com/Bioconductor-mirror/crlmm

ekarlins commented 7 years ago

http://bioconductor.org/packages/release/bioc/vignettes/crlmm/inst/doc/IlluminaPreprocessCN.pdf

ngiangre commented 7 years ago

snprmaAffy might be the function we want to look at? https://github.com/Bioconductor-mirror/crlmm/blob/master/R/cnrma-functions.R