search

NCBI-Hackathons / Scan2CNV

MIT License
1 stars 0 forks source link

python pipeline using gtc files #5

Closed ekarlins closed 7 years ago

ekarlins commented 7 years ago

Create gtc files with AutoExtract.exe (possibly with Beeline). Use Illumina python library to parse gtc files and extract info for CNV calling.

https://github.com/Illumina/BeadArrayFiles

ekarlins commented 7 years ago

Added script to convert gtc to input format for PennCNV.

ekarlins commented 7 years ago

See issue #8, the conversation is moving there.