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NCBI-Hackathons / SimpleGeneExpression

Programs to quantify expression of transcripts from public datasets
MIT License
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Filtering during BLAST #2

Closed DCGenomics closed 5 years ago

DCGenomics commented 5 years ago

There is no need to keep very short hits that are in the middle of transcripts or the middle of targets. Can we filter during the BLAST step?

jdieramon commented 5 years ago

When running Magic-Blast (f. ex.): -perc_identity 90 for hits with >= 90% identity

More info : magicblast -help