Open pcantalupo opened 7 years ago
Magicblast can handle fastq files, so it should be relatively trivial.
Cheers!
Ben
On Sep 28, 2017 4:07 PM, "Paul Cantalupo" notifications@github.com wrote:
This issue is for those who want to run viruspy against sequences that are not in the SRA database. A clear case for this is somebody that did their own sequencing and has a set of FASTQ files that they want to analyze.
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Update...added -query
option support in magicblast_w_opts.sh
script (802a23d0d6c45cb56b17c9717668348b45833b6a) but still need to implement the -infmt
option to accept fastq files
This issue is for those who want to run viruspy against sequences that are not in the SRA database. A clear case for this is somebody that did their own sequencing and has a set of FASTQ files that they want to analyze.