search

NCBI-Hackathons / seqr

Creative Commons Zero v1.0 Universal
12 stars 2 forks source link

Parallel Translation searches #21

Open averagehat opened 9 years ago

averagehat commented 9 years ago

Does it make sense to make a Solr request for each sequence frame concurrently? I am not sure if Embedded Solr might make better use of all cores automatically.

lianyi commented 9 years ago

Yes, we can configure how many searcher thread can be used per core. I remember it's 2 in current setting.

-lianyi

On Thu, Aug 13, 2015 at 2:50 PM, Mike Panciera notifications@github.com wrote:

Does it make sense to make a Solr request for each sequence frame concurrently? I am not sure if Embedded Solr might make better use of all cores automatically.

— Reply to this email directly or view it on GitHub https://github.com/DCGenomics/seqr/issues/21.

averagehat commented 9 years ago

Good, that should be a commandline setting if possible; I'll look into it as we are about to do some checkpointing of seqr against blast/diamond once I can get the databases to be equivalent.