NCBI-Hackathons / seqr

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Commandline Options #22

Open averagehat opened 8 years ago

averagehat commented 8 years ago

We want to support many of the options blast does, but some are not applicable. @pcantalupo requested

-num_threads
-outfmt 6 std with these additional specifiers: qcovs, qcovhsp, qlen, slen
-show_gis
-evalue
-lcase_masking
-max_target_seqs
-word_size
-perc_identity

I don't think evalue or word_size translate to Seqr. I'm sure how lcase_masking will be done but I'm sure it's possible.