@laijasmine I had a little time today while I was getting my RStudio environments up to speed to look into this.
The issue is in pi_correspondence/replicate_dataset.Rmd - For some reason, the function to set eval = FALSE for the other chunks in the Rmd does not play nicely with the bookdown rendering.
knitr::opts_chunk$set(eval = F)
If we take this out and just put a eval = FALSE on each chunk that needs it instead, things start to work as expected. I can submit a PR for this if you'd like, otherwise I'll leave you that info to do with as you see fit!
@laijasmine I had a little time today while I was getting my RStudio environments up to speed to look into this.
The issue is in
pi_correspondence/replicate_dataset.Rmd
- For some reason, the function to set eval = FALSE for the other chunks in the Rmd does not play nicely with the bookdown rendering.If we take this out and just put a
eval = FALSE
on each chunk that needs it instead, things start to work as expected. I can submit a PR for this if you'd like, otherwise I'll leave you that info to do with as you see fit!