Closed mbjones closed 5 years ago
mbjones
commented
6 years ago Original Redmine Comment Author Name: ben leinfelder (ben leinfelder) Original Date: 2014-04-15T23:06:44Z
This doesn't look like an Ubuntu issue - does it happen for other 10.04 hosts?
Is it just that indexing is trying to find the document before it is fully replicated?
edu.ucsb.nceas.metacat.McdbDocNotFoundException: the requested docid 'tao.13002' does not exist
Original Redmine Comment Author Name: Jing Tao (Jing Tao) Original Date: 2014-04-15T23:28:49Z
Note sure. Just see the issue today.
mbjones
commented
6 years ago Original Redmine Comment Author Name: Jing Tao (Jing Tao) Original Date: 2014-04-22T20:53:11Z
Metacat indexed a document before it wrote to db. This issue was fixed.
Author Name: Jing Tao (Jing Tao) Original Redmine Issue: 6516, https://projects.ecoinformatics.org/ecoinfo/issues/6516 Original Date: 2014-04-15
When I use morpho 1.10 branch to insert a package into a local Metacat, which is ubuntu 14.04, the solr index works fine. However, the remote server, which is ubuntu 12.04, got the error: metacat 20140415-14:31:01: [WARN]: XMLService.populateRegisteredSchemaList - Schema file: /var/lib/tomcat7/webapps/knb/schema/fgdc-std-001/fgdc-std-001-1998.xsd is registered in the database but does not exist on the file system. [edu.ucsb.nceas.metacat.service.XMLSchemaService] edu.ucsb.nceas.metacat.McdbDocNotFoundException: the requested docid 'tao.13002' does not exist at edu.ucsb.nceas.metacat.DocumentImpl.isRevisionOnly(DocumentImpl.java:2159) at edu.ucsb.nceas.metacat.DocumentImpl.getDocumentInfo(DocumentImpl.java:2190) at edu.ucsb.nceas.metacat.DocumentImpl.(DocumentImpl.java:228)
at edu.ucsb.nceas.metacat.DocumentImpl.(DocumentImpl.java:257)
at edu.ucsb.nceas.metacat.replication.ReplicationService.getDocumentInfo(ReplicationService.java:1097)
at edu.ucsb.nceas.metacat.replication.ReplicationService.getDocumentInfoMap(ReplicationService.java:1073)
at edu.ucsb.nceas.metacat.dataone.hazelcast.ObjectPathMap.pathToDocid(ObjectPathMap.java:76)
at edu.ucsb.nceas.metacat.dataone.hazelcast.ObjectPathMap.load(ObjectPathMap.java:99)
at edu.ucsb.nceas.metacat.dataone.hazelcast.ObjectPathMap.load(ObjectPathMap.java:43)
at com.hazelcast.impl.concurrentmap.MapStoreWrapper.load(MapStoreWrapper.java:143)
at com.hazelcast.impl.ConcurrentMapManager$GetOperationHandler$GetLoader.doMapStoreOperation(ConcurrentMapManager.java:3785)
at com.hazelcast.impl.ConcurrentMapManager$AbstractMapStoreOperation.run(ConcurrentMapManager.java:3860)
at com.hazelcast.impl.executor.ParallelExecutorService$ParallelExecutorImpl$ExecutionSegment.run(ParallelExecutorService.java:212)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:744)
at com.hazelcast.impl.ExecutorThreadFactory$1.run(ExecutorThreadFactory.java:38)
metacat-index 20140415-14:31:01: [ERROR]: SolrIndex.update - could not update the solr index since null [edu.ucsb.nceas.metacat.index.SolrIndex]
java.lang.NullPointerException
at java.io.FileInputStream.(FileInputStream.java:138)
at java.io.FileInputStream.(FileInputStream.java:101)
at edu.ucsb.nceas.metacat.index.SolrIndex.update(SolrIndex.java:513)
at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryUpdated(SystemMetadataEventListener.java:146)
at edu.ucsb.nceas.metacat.index.SystemMetadataEventListener.entryAdded(SystemMetadataEventListener.java:119)
at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:148)
at com.hazelcast.client.impl.EntryListenerManager.notifyListeners(EntryListenerManager.java:130)
at com.hazelcast.client.impl.ListenerManager.customRun(ListenerManager.java:88)
at com.hazelcast.client.ClientRunnable.run(ClientRunnable.java:30)
at java.lang.Thread.run(Thread.java:744)
I used morpho to insert the package to Ubuntu 12.04. The metacat with 14.04 got the error as well.
But the timed solr index process can pick up those failed documents.