giving a bed file to imsindel

NCGG-MGC / IMSindel

IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis

https://www.nature.com/articles/s41598-018-23978-z

MIT License

15 stars 0 forks source link

giving a bed file to imsindel #18

Open jollymrt opened 3 years ago

jollymrt commented 3 years ago

I have a targeted panel for which I want to call variants. Is there way to give a bed file or regions of interest to IMSIndel instead of just a chromosome.

holrock commented 3 years ago

Currently, bed files are not supported. I recommend using samtools view -L target.bed.