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NCGG-MGC / IMSindel

IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
https://www.nature.com/articles/s41598-018-23978-z
MIT License
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ZeroDivisionError #4

Closed thedam closed 6 years ago

thedam commented 6 years ago

Hi, Sometimes the following error appear. I guess it happens when there are no reads mapped.

>3. considering support reads...done
>4. making consensus seqs from support reads...
Traceback (most recent call last):
        5: from /mnt/ssd_01/PROGRAMS/IMSindel/bin/imsindel:44:in `<main>'
        4: from /mnt/ssd_01/PROGRAMS/IMSindel/lib/ims_indel.rb:31:in `run'
        3: from /mnt/ssd_01/PROGRAMS/IMSindel/lib/ims_indel.rb:87:in `run_make_consensus_support_reads'
        2: from /mnt/ssd_01/PROGRAMS/IMSindel/lib/ims_indel/consensus.rb:32:in `make_support_read_consensus'
        1: from /mnt/ssd_01/PROGRAMS/IMSindel/lib/ims_indel/consensus.rb:77:in `make_consensus_with_threads'
/mnt/ssd_01/PROGRAMS/IMSindel/lib/ims_indel/consensus.rb:77:in `/': divided by 0 (ZeroDivisionError)

Regards Damian

holrock commented 6 years ago

thanks for the report. we'll fix that.