The NUMBER represents the confidence score calculated by PeptideShaker. This number ranges between 0 to 100 (highest) and indicates how confident we are that this protein is expressed in the given sample. The rate of false positive results is less than 1 in 1000 (FDR < 0.01).
If Search Breaks; Refresh the page or click the Link - Make sure to clear all search boxes if data not showing
The Table displays data by PXD (by default) which is a dataset identifier set by PRIDE (ProteomeExchange consortium)
The first section of the table displays the sample number, along with and ORF1/2p Identifications
The sub-table for the samples display the variants that may occur
The table can be sorted by any column header simply by clicking on it
We have given different variants of the same family a different name by simply adding an underscore followed by a number. (e.g: ORF1p_HS_10). The last number has no biological meaning.
There could be protein results by three LINE-1 protein families: HS, PA2 and PA3.
And 3 different proteins by HERVs (the gag, pol and env groups)
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The NUMBER represents the confidence score calculated by PeptideShaker. This number ranges between 0 to 100 (highest) and indicates how confident we are that this protein is expressed in the given sample. The rate of false positive results is less than 1 in 1000 (FDR < 0.01).
If Search Breaks; Refresh the page or click the Link - Make sure to clear all search boxes if data not showing
The Table displays data by PXD (by default) which is a dataset identifier set by PRIDE (ProteomeExchange consortium) The first section of the table displays the sample number, along with and ORF1/2p Identifications The sub-table for the samples display the variants that may occur
The table can be sorted by any column header simply by clicking on it
We have given different variants of the same family a different name by simply adding an underscore followed by a number. (e.g: ORF1p_HS_10). The last number has no biological meaning.
There could be protein results by three LINE-1 protein families: HS, PA2 and PA3. And 3 different proteins by HERVs (the gag, pol and env groups)