TEGS4_Run secondary analysis on ATAC-seq data

NCI-CCDI / CCDITEGS_Bioinformatics

This is an internal repository to track tasks on Project boards as issues

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Open Krithika-Bhuvan opened 10 months ago

Krithika-Bhuvan commented 10 months ago

Secondary analysis included

Using chipseeker to see average profiles of consensus bed files
Modify ASPEN DEseq2 code as it was not working for this dataset. Run Diff peak analysis
Run downstream enrichment on the diff peaks
Plot venn diagram to look for intersection