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NCI-CCR-GB
/
serpentine
Serpentine is a growing collection of rules and workflows for NGS data processing.
https://github.com/NCI-CCR-GB/serpentine
MIT License
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License for serpentine code?
#16
tomsing1
closed
8 years ago
1
Make 2 instances pbs/slurm.
#15
patidarr
opened
9 years ago
0
dowloading files from GEO
#14
al2na
closed
9 years ago
0
Added more qc rules and modied rules of annotatevcf, etc.
#13
zhujack
closed
9 years ago
0
seqtool error in seqtool vcf melt (for snpEff 4.0)
#12
zhujack
opened
9 years ago
1
More new rules added, multiple rules and files modified
#11
zhujack
closed
9 years ago
3
implemented GATK Haplotype Caller rule and workflow
#10
joshwaterfall
closed
9 years ago
0
Add mapper namespace
#9
seandavi
closed
9 years ago
1
Freebayes workflow
#8
seandavi
closed
9 years ago
1
VQSR implementation
#7
seandavi
opened
9 years ago
0
Add logging output for bam processing steps
#6
seandavi
closed
9 years ago
0
Design HTML report for exome pipeline
#5
seandavi
opened
9 years ago
0
GATK Haplotype Caller rules
#4
seandavi
closed
9 years ago
0
Freebayes variant calling rules
#3
seandavi
closed
9 years ago
1
Indel Realigner rules implementation
#2
seandavi
closed
9 years ago
0
novoalign mapping rules
#1
seandavi
closed
9 years ago
3