make bed file (and gzipped bed file) optional

NCI-CGR / GEMSCAN

Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

https://nci-cgr.github.io/GEMSCAN/

MIT License

7 stars 8 forks source link

Open shukwong opened 3 years ago

shukwong commented 3 years ago

gzip the bed file as part of the preprocessing workflow

shukwong commented 3 years ago

If the user wants to do WES or WGS they don't need to provide a bed file