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NCI-CGR / GEMSCAN

Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
https://nci-cgr.github.io/GEMSCAN/
MIT License
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force samples.txt columns to be str #32

Closed shukwong closed 2 years ago

shukwong commented 2 years ago

Forcing dtype = str in: def read_samplesFile(samplesFile): samplesTable = pd.read_table(samplesFile, sep="\t", header='infer', dtype=str)
return(samplesTable)

This fixes https://github.com/NCI-CGR/GEMSCAN/issues/31