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NCI-CGR / GEMSCAN

Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
https://nci-cgr.github.io/GEMSCAN/
MIT License
7 stars 8 forks source link

temp directory is having issues #44

Open shukwong opened 6 months ago

shukwong commented 6 months ago

using the param option, Snakemake is unable to create the directory. using an existing directory for bcftools sort temporary directory instead.

shukwong commented 6 months ago

changed to the output directories instead as a temporary fix, will look into it for a better solution