search

NCI-CGR / GwasQcPipeline

The CGR GWAS QC processing workflow.
https://nci-cgr.github.io/GwasQcPipeline/
MIT License
0 stars 2 forks source link

required output file .nosex #214

Open 1teaspoon opened 2 years ago

1teaspoon commented 2 years ago

when plink .fam file has sex phenotype, .nosex is not generated which causes an error because .nosex is always expected as an output

shukwong commented 2 years ago

remove the expectation of .nosex information when plink files are used as input files, will provide test dataset

ngaddis commented 9 months ago

Either correct at each step that uses plink or remove sex at beginning and add back at the end or add touch command.