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NCI-CGR / GwasQcPipeline

The CGR GWAS QC processing workflow.
https://nci-cgr.github.io/GwasQcPipeline/
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Snakemake version #225

Closed FrederickDong closed 2 years ago

FrederickDong commented 2 years ago

Snakemake version in production version of pipeline appears to change unpredictably (6.12 in GCP, 6.15.5 on Biowulf), despite being specified in the lock file as 6.4.1. Dev version installs 6.4.1 but encounters errors that are resolved by downgrading to 6.15.5.

FrederickDong commented 2 years ago

pyproject.toml has been updated. Snakemake changed to a tilde dependency with version specified as 6.15.5. This is confirmed to run on Biowulf.

Will confirm output and test run on GCP.

dorks81 commented 2 years ago

Confirmed on Biowulf