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NCI-CGR / GwasQcPipeline

The CGR GWAS QC processing workflow.
https://nci-cgr.github.io/GwasQcPipeline/
MIT License
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Issue 222 #309

Closed carynwillis closed 3 months ago

carynwillis commented 3 months ago

Pull request for issue #222 to correct missing allele for monomorphic snaps. This was fixed by converting GTC to VCF to Plink format instead of GTC to PED/MAP to Plink.