NCI-CGR / GwasQcPipeline

The CGR GWAS QC processing workflow.
https://nci-cgr.github.io/GwasQcPipeline/
MIT License
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GTC to VCF creating too large of file for 100K+ samples #318

Open carynwillis opened 1 week ago

carynwillis commented 1 week ago

The new GTC to VCF step takes a long time if running on a large sample size and creates a very large (1TB+) vcf file. Will attempt to reduce file size by writing to a bcf instead of vcf.